CYP2D6 gene resequencing in the Malagasy, a population at the crossroads between Asia and Africa: a pilot study
DOI: 10.2217/pgs-2021-0146; PMCID: PMC8965795
Background: Plasmodium vivax malaria is endemic in Madagascar, where populations have genetic inheritance from Southeast Asia and East Africa. Primaquine, a drug of choice for vivax malaria, is metabolized principally via CYP2D6. CYP2D6 variation was characterized by locus-specific gene sequencing and was compared with TaqMan™ genotype data. Materials & methods: Long-range PCR amplicons were generated from 96 Malagasy samples and subjected to next-generation sequencing. Results: The authors observed high concordance between TaqMan™-based CYP2D6 genotype calls and the base calls from sequencing. In addition, there are new variants and haplotypes present in the Malagasy. Conclusion: Sequencing unique admixed populations provides more detailed and accurate insights regarding CYP2D6 variability, which may help optimize primaquine treatment across human genetic diversity.
Africa; Antimalarials; Asia; Cytochrome P-450 CYP2D6; Humans; Pilot Projects; Primaquine
CYP2D6; Madagascar; Plasmodium vivax; malaria treatment; next-generation sequencing; primaquine
Chan ER, Mehlotra RK, Pirani KA, et al. CYP2D6 gene resequencing in the Malagasy, a population at the crossroads between Asia and Africa: a pilot study. Pharmacogenomics. 2022;23(5):315-325. doi:10.2217/pgs-2021-0146
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Publisher's Link: https://doi.org/10.2217/pgs-2021-0146