Document Type

Article

Publication Date

3-23-2023

Identifier

DOI: 10.1128/jcm.01652-22; PMCID: PMC10035298

Abstract

Fecal culture for isolation and identification of Shigella may take days. The BioFire FilmArray Gastrointestinal (GI) panel (bioMérieux, France) is a PCR-based assay that detects enteric pathogens including Shigella/enteroinvasive Escherichia coli (EIEC) in about an hour. The aim of this study was to evaluate the impact of GI panel detection of Shigella in a pediatric emergency department (ED) during an outbreak. Stool samples from children with acute gastroenteritis were tested by the GI panel. Test results were either withheld in preintervention (PRE) or reported to clinicians/families in the postintervention (POST) period. The impact of the GI panel testing on patient management and outcomes was measured. Shigella/EIEC was identified by the GI panel in the PRE (n = 30) and POST (n = 21) phase. The GI panel detected more Shigella infections than did culture; six of 31 (19.4%) Shigella GI panel-positive patients who also had stool cultures were missed by culture. Azithromycin therapy was prescribed for 20% of subjects in the PRE phase and 71.4% of subjects in the POST phase (P < 0.001). Time from the clinical encounter until starting azithromycin therapy was shorter in the POST phase (n = 9), 8.25 h (range, 6.37 to 52.37 h), than in the PRE phase (n = 1), 72 h. Six subjects in the PRE phase visited additional providers compared with one in the POST phase. Prompt diagnosis of shigellosis with the GI panel may provide the opportunity for prompt antimicrobial therapy and avoid additional visits to providers due to early definitive diagnosis. Prompt diagnosis of Shigella at an ED visit may optimize patient management and reduce transmission.

Journal Title

Journal of clinical microbiology

Volume

61

Issue

3

First Page

0165222

Last Page

0165222

MeSH Keywords

Humans; Child; Azithromycin; Feces; Shigella; Dysentery, Bacillary; Escherichia coli; Disease Outbreaks

Keywords

BioFire GI panel; GI panel; IMPACT study; Shigella detection; outbreak management; shigellosis

Comments

Grant support

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

Publisher's Link: https://doi.org/10.1128/jcm.01652-22

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